Stan,
I bought some special "low frequency" ferrites a while back (<1MHz). Even with multiple ferrrites per line, they were no magic fix. Typical clamp-on ferrites are higher frequency than the ones I have and they are not likely to help. I think that the frequency range of interest is just too low for them to be effective. The good news is that they didn't seem to hurt performance any.
I added them to the amplifier-to-controller lines, power supply, GPS antenna. I think that I might have tried them on my old Green unit at the input lines from the antennas, but I don't remember any improvement.
As long as the ferrites are common-mode to both amplifier input wires I would think that it shouldn't hurt anything. Don't put it around just the "signal" input antenna cable alone. Then there could be an adverse affect.
Greg H.